If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ), 'gf_id' => 'HOM05D000727', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000727' ), 'data_identifier' => 'HOM05D000727', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000727', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03050' => 'bna', 'A02p40980' => 'bna', 'A03p48550' => 'bna', 'A03p63690' => 'bna', 'A04p26370' => 'bna', 'A06p34390' => 'bna', 'A07p03410' => 'bna', 'A07p15520' => 'bna', 'A09p06950' => 'bna', 'A09p11430' => 'bna', 'A09p45000' => 'bna', 'Aa31LG10G6930' => 'aar', 'Aa31LG11G2850' => 'aar', 'Aa31LG6G12540' => 'aar', 'Aa31LG7G4890' => 'aar', 'Aa31LG8G14860' => 'aar', 'Aa31sc318G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4054' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5706' => 'aag', 'Actinidia04069' => 'ach', 'Actinidia04086' => 'ach', 'Actinidia04129' => 'ach', 'Actinidia05368' => 'ach', 'Actinidia09054' => 'ach', 'Actinidia11595' => 'ach', 'Actinidia16722' => 'ach', 'Actinidia17056' => 'ach', 'Actinidia17361' => 'ach', 'Actinidia18446' => 'ach', 'Actinidia19515' => 'ach', 'Actinidia20730' => 'ach', 'Actinidia29106' => 'ach', 'Ah.01g011600' => 'amhyb', 'AL1G33670' => 'aly', 'AL1G33680' => 'aly', 'AL3G50530' => 'aly', 'AL4G30420' => 'aly', 'AL5G19680' => 'aly', 'AL5G32370' => 'aly', 'AL6G30600' => 'aly', 'AL6G34680' => 'aly', 'AL6G34690' => 'aly', 'AL6G34700' => 'aly', 'AL7G15590' => 'aly', 'Aqoxy1G01750' => 'aox', 'Aqoxy2G00915' => 'aox', 'Aqoxy3G04324' => 'aox', 'Aqoxy4G00506' => 'aox', 'Aqoxy4G02598' => 'aox', 'Aqoxy4G02681' => 'aox', 'Aqoxy5G01012' => 'aox', 'Aqoxy6G01624' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3NB7SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78GQMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F15T7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLWT23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BS74YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2TLBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0PYWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ8H38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J62Q7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM0DSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JMJW5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4HZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3R5C5' => 'arhy', 'AT1G20693' => 'ath', 'AT1G20696' => 'ath', 'AT2G17560' => 'ath', 'AT2G34450' => 'ath', 'AT3G51880' => 'ath', 'AT4G35570' => 'ath', 'AT5G23405' => 'ath', 'AT5G23420' => 'ath', 'ATR0124G023' => 'atr', 'ATR0315G115' => 'atr', 'ATR0585G098' => 'atr', 'ATR0618G150' => 'atr', 'ATR0800G037' => 'atr', 'ATR0807G249' => 'atr', 'Atru.chr1.2874' => 'acertr', 'Atru.chr11.63' => 'acertr', 'Atru.chr12.22' => 'acertr', 'Atru.chr13.117' => 'acertr', 'Atru.chr3.135' => 'acertr', 'Atru.chr6.3176' => 'acertr', 'Atru.chr8.2229' => 'acertr', 'AUR62017747' => 'cqu', 'AUR62027603' => 'cqu', 'AUR62030237' => 'cqu', 'AUR62030814' => 'cqu', 'AUR62032906' => 'cqu', 'AUR62035132' => 'cqu', 'AUR62040822' => 'cqu', 'BcaB01g00409' => 'bca', 'BcaB01g00470' => 'bca', 'BcaB03g12857' => 'bca', 'BcaB03g14305' => 'bca', 'BcaB03g16528' => 'bca', 'BcaB04g19869' => 'bca', 'BcaB06g28770' => 'bca', 'BcaB07g32065' => 'bca', 'BcaB07g32068' => 'bca', 'BcaC04g22966' => 'bca', 'BcaC04g23495' => 'bca', 'BcaC06g33012' => 'bca', 'BcaC06g33014' => 'bca', 'BcaC06g33358' => 'bca', 'BcaC06g34831' => 'bca', 'BcaC06g36290' => 'bca', 'BcaC07g39050' => 'bca', 'BcaNung00581' => 'bca', 'BcaNung03640' => 'bca', 'BcaNung03729' => 'bca', 'BcaNung03850' => 'bca', 'BcaNung04339' => 'bca', 'BcaNung05034' => 'bca', 'BolC1t00327H' => 'bol', 'BolC2t12139H' => 'bol', 'BolC4t27844H' => 'bol', 'BolC5t30631H' => 'bol', 'BolC7t40969H' => 'bol', 'BolC7t42826H' => 'bol', 'BolC7t44938H' => 'bol', 'BolC7t45180H' => 'bol', 'BolC7t46551H' => 'bol', 'BolC8t49661H' => 'bol', 'BolC8t50324H' => 'bol', 'BolC9t53688H' => 'bol', 'BolC9t54235H' => 'bol', 'BraA01t00289Z' => 'bra', 'BraA02t09046Z' => 'bra', 'BraA03t13960Z' => 'bra', 'BraA03t15440Z' => 'bra', 'BraA04t18141Z' => 'bra', 'BraA06t24775Z' => 'bra', 'BraA06t26369Z' => 'bra', 'BraA07t28138Z' => 'bra', 'BraA07t29293Z' => 'bra', 'BraA09t36343Z' => 'bra', 'BraA09t36783Z' => 'bra', 'BraA09t39960Z' => 'bra', 'C01p03400' => 'bna', 'C02p60870' => 'bna', 'C04p41080' => 'bna', 'C04p63780' => 'bna', 'C07p05700' => 'bna', 'C07p22860' => 'bna', 'C07p44140' => 'bna', 'C07p46650' => 'bna', 'C07p61250' => 'bna', 'C08p27110' => 'bna', 'C09p07710' => 'bna', 'C09p13450' => 'bna', 'CAN.G1238.10' => 'can', 'CAN.G1308.3' => 'can', 'CAN.G354.15' => 'can', 'CAN.G419.9' => 'can', 'CAN.G5.28' => 'can', 'CAN.G588.23' => 'can', 'CANSAT25G1035' => 'cansat', 'CANSAT35G0903' => 'cansat', 'CANSAT35G1354' => 'cansat', 'CANSAT64G2837' => 'cansat', 'CANSAT78G1765' => 'cansat', 'CARHR021130' => 'chi', 'CARHR021140' => 'chi', 'CARHR107740' => 'chi', 'CARHR128540' => 'chi', 'CARHR161510' => 'chi', 'CARHR190090' => 'chi', 'CARHR243910' => 'chi', 'Carub.0001s0937' => 'cru', 'Carub.0001s2015' => 'cru', 'Carub.0001s2016' => 'cru', 'Carub.0003s3165' => 'cru', 'Carub.0004s1612' => 'cru', 'Carub.0005s1823' => 'cru', 'Carub.0006s2120' => 'cru', 'Carub.0007s0475' => 'cru', 'Ca_02855_v3' => 'car', 'Ca_07631_v3' => 'car', 'Ca_11274_v3' => 'car', 'Ca_15407_v3' => 'car', 'Ca_24979_v3' => 'car', 'Ca_24980_v3' => 'car', 'Ca_29882_v3' => 'car', 'Ca_30687_v3' => 'car', 'Cc00_g24770' => 'ccan', 'Cc06_g01450' => 'ccan', 'Cc07_g11830' => 'ccan', 'Cc09_g08820' => 'ccan', 'Cc11_g04510' => 'ccan', 'CDE03G0021' => 'cde', 'CDE04G3528' => 'cde', 'CDE06G1625' => 'cde', 'CDE08G0404' => 'cde', 'CDE08G0504' => 'cde', 'CDE09G0361' => 'cde', 'Cfa000965' => 'cfa', 'Cfa001327' => 'cfa', 'Cfa007076' => 'cfa', 'Cfa014412' => 'cfa', 'Cfa017213' => 'cfa', 'Cfa018677' => 'cfa', 'Ciclev10002782m.g' => 'ccl', 'Ciclev10012868m.g' => 'ccl', 'Ciclev10016587m.g' => 'ccl', 'Ciclev10017037m.g' => 'ccl', 'Ciclev10026715m.g' => 'ccl', 'Ciclev10032930m.g' => 'ccl', 'CiPaw.01G297700' => 'cil', 'CiPaw.02G191800' => 'cil', 'CiPaw.03G160400' => 'cil', 'CiPaw.07G002900' => 'cil', 'CiPaw.07G136600' => 'cil', 'CiPaw.08G074800' => 'cil', 'CiPaw.09G125900' => 'cil', 'CiPaw.10G093100' => 'cil', 'CiPaw.10G156100' => 'cil', 'CiPaw.16G001200' => 'cil', 'ClCG01G007990' => 'cla', 'ClCG01G024500' => 'cla', 'ClCG02G008680' => 'cla', 'ClCG07G010730' => 'cla', 'ClCG10G000260' => 'cla', 'ClCG11G018780' => 'cla', 'COL.COLO4_14544' => 'col', 'COL.COLO4_22549' => 'col', 'COL.COLO4_25700' => 'col', 'COL.COLO4_33133' => 'col', 'COL.COLO4_36418' => 'col', 'COL.COLO4_38297' => 'col', 'Cpa.g.sc11.167' => 'cpa', 'Cpa.g.sc19.183' => 'cpa', 'Cpa.g.sc247.1' => 'cpa', 'Cpa.g.sc26.174' => 'cpa', 'Cpa.g.sc365.4' => 'cpa', 'CsaV3_2G034980' => 'csa', 'CsaV3_3G000290' => 'csa', 'CsaV3_4G026240' => 'csa', 'CsaV3_4G037350' => 'csa', 'CsaV3_5G021890' => 'csa', 'CsaV3_6G051620' => 'csa', 'CSS0006889' => 'camsi', 'CSS0008683' => 'camsi', 'CSS0008853' => 'camsi', 'CSS0015298' => 'camsi', 'CSS0018830' => 'camsi', 'CSS0022723' => 'camsi', 'CSS0023961' => 'camsi', 'CSS0039608' => 'camsi', 'CSS0045349' => 'camsi', 'CSS0047746' => 'camsi', 'CSS0049308' => 'camsi', 'DCAR_016783' => 'dca', 'DCAR_016784' => 'dca', 'DCAR_018706' => 'dca', 'DCAR_027945' => 'dca', 'DCAR_030351' => 'dca', 'Dinv02932' => 'din', 'Dinv08164' => 'din', 'Dinv17654' => 'din', 'Dinv17983' => 'din', 'Dinv23097' => 'din', 'Dinv30718' => 'din', 'Dinv31958' => 'din', 'Dinv32274' => 'din', 'Dinv40188' => 'din', 'Duzib041G0480' => 'dzi', 'Duzib093G1450' => 'dzi', 'Duzib093G2247' => 'dzi', 'Duzib106G0577' => 'dzi', 'Duzib106G1496' => 'dzi', 'Duzib114G0948' => 'dzi', 'Duzib116G0559' => 'dzi', 'Duzib128G1336' => 'dzi', 'Duzib132G0609' => 'dzi', 'Duzib147G1147' => 'dzi', 'Duzib160G0640' => 'dzi', 'Duzib235G1433' => 'dzi', 'Duzib248G1122' => 'dzi', 'ECA232G3501' => 'eca', 'ECA233G0507' => 'eca', 'ECA234G1142' => 'eca', 'ECA236G1464' => 'eca', 'ECA246G0005' => 'eca', 'ECA246G5085' => 'eca', 'ECA247G2462' => 'eca', 'EL10Ac1g01919' => 'bvu', 'EL10Ac9g23010' => 'bvu', 'EL10As10g23972' => 'bvu', 'Eucgr.A00506' => 'egr', 'Eucgr.D00306' => 'egr', 'Eucgr.F03571' => 'egr', 'Eucgr.H01676' => 'egr', 'Eucgr.J00336' => 'egr', 'Eucgr.J02535' => 'egr', 'FAN01G2349' => 'fan', 'FAN02G0049' => 'fan', 'FAN03G3206' => 'fan', 'FAN04G1929' => 'fan', 'FAN05G0296' => 'fan', 'FAN06G2531' => 'fan', 'FAN07G1889' => 'fan', 'FAN08G1233' => 'fan', 'FAN09G4298' => 'fan', 'FAN10G3038' => 'fan', 'FAN11G3699' => 'fan', 'FAN12G0447' => 'fan', 'FAN12G2363' => 'fan', 'FAN12G2672' => 'fan', 'FAN13G1494' => 'fan', 'FAN14G4731' => 'fan', 'FAN14G4982' => 'fan', 'FAN16G1096' => 'fan', 'FAN17G1781' => 'fan', 'FAN18G2342' => 'fan', 'FAN18G3867' => 'fan', 'FAN19G0340' => 'fan', 'FAN21G3414' => 'fan', 'FAN23G0363' => 'fan', 'FAN26G1647' => 'fan', 'FAN28G1793' => 'fan', 'FvH4_1g10340' => 'fve', 'FvH4_1g28524' => 'fve', 'FvH4_3g05880' => 'fve', 'FvH4_4g14340' => 'fve', 'FvH4_4g25270' => 'fve', 'FvH4_4g37280' => 'fve', 'FvH4_5g24080' => 'fve', 'FvH4_5g25420' => 'fve', 'FvH4_6g11530' => 'fve', 'FvH4_7g08880' => 'fve', 'FvH4_7g24360' => 'fve', 'Glyma.01G116000' => 'gma', 'Glyma.03G060200' => 'gma', 'Glyma.04G016800' => 'gma', 'Glyma.05G128900' => 'gma', 'Glyma.05G129000' => 'gma', 'Glyma.06G017100' => 'gma', 'Glyma.08G083451' => 'gma', 'Glyma.08G083600' => 'gma', 'Glyma.09G198300' => 'gma', 'Glyma.10G288300' => 'gma', 'Glyma.13G030100' => 'gma', 'Glyma.16G116300' => 'gma', 'Glyma.20G012800' => 'gma', 'Glyma.20G100600' => 'gma', 'Gohir.A01G104100' => 'ghi', 'Gohir.A01G227700' => 'ghi', 'Gohir.A02G085400' => 'ghi', 'Gohir.A05G178400' => 'ghi', 'Gohir.A07G170978' => 'ghi', 'Gohir.A09G164700' => 'ghi', 'Gohir.A10G039400' => 'ghi', 'Gohir.A11G224000' => 'ghi', 'Gohir.A12G133000' => 'ghi', 'Gohir.A13G015700' => 'ghi', 'Gohir.D01G089300' => 'ghi', 'Gohir.D01G217500' => 'ghi', 'Gohir.D02G101100' => 'ghi', 'Gohir.D04G041700' => 'ghi', 'Gohir.D05G181800' => 'ghi', 'Gohir.D05G280300' => 'ghi', 'Gohir.D06G148000' => 'ghi', 'Gohir.D07G177800' => 'ghi', 'Gohir.D09G160300' => 'ghi', 'Gohir.D10G040200' => 'ghi', 'Gohir.D12G136500' => 'ghi', 'Gohir.D13G016800' => 'ghi', 'Gorai.001G198900' => 'gra', 'Gorai.002G115100' => 'gra', 'Gorai.002G263800' => 'gra', 'Gorai.005G114500' => 'gra', 'Gorai.006G181900' => 'gra', 'Gorai.008G147700' => 'gra', 'Gorai.009G186800' => 'gra', 'Gorai.011G042300' => 'gra', 'Gorai.012G047000' => 'gra', 'Gorai.013G018500' => 'gra', 'GSVIVG01013385001' => 'vvi', 'GSVIVG01021424001' => 'vvi', 'GSVIVG01026642001' => 'vvi', 'GSVIVG01032839001' => 'vvi', 'GSVIVG01032840001' => 'vvi', 'GSVIVG01033966001' => 'vvi', 'GSVIVG01034361001' => 'vvi', 'HanXRQChr01g0005941' => 'han', 'HanXRQChr12g0366521' => 'han', 'HanXRQChr12g0366531' => 'han', 'HanXRQChr13g0406191' => 'han', 'HanXRQChr13g0417961' => 'han', 'HanXRQChr15g0480191' => 'han', 'HanXRQChr16g0531871' => 'han', 'HanXRQChr17g0540661' => 'han', 'Haze_03656' => 'cav', 'Haze_03662' => 'cav', 'Haze_05566' => 'cav', 'Haze_12872' => 'cav', 'Haze_17217' => 'cav', 'Haze_17405' => 'cav', 'Haze_20996' => 'cav', 'Haze_22819' => 'cav', 'Haze_26403' => 'cav', 'Hma1.2p1_0137F.1_g062490' => 'hma', 'Hma1.2p1_0300F.1_g118000' => 'hma', 'Hma1.2p1_0507F.1_g168680' => 'hma', 'Hma1.2p1_0513F.1_g169510' => 'hma', 'Hma1.2p1_0612F.1_g188840' => 'hma', 'HPP92_004947' => 'vpl', 'HPP92_008380' => 'vpl', 'HPP92_014761' => 'vpl', 'HPP92_015306' => 'vpl', 'HPP92_015835' => 'vpl', 'HPP92_015848' => 'vpl', 'HPP92_023289' => 'vpl', 'Hund09512' => 'sun', 'Hund17791' => 'sun', 'Hund19700' => 'sun', 'Hund19701' => 'sun', 'Lalb_Chr01g0008321' => 'lal', 'Lalb_Chr02g0144141' => 'lal', 'Lalb_Chr05g0214791' => 'lal', 'Lalb_Chr05g0229651' => 'lal', 'Lalb_Chr06g0164361' => 'lal', 'Lalb_Chr07g0188681' => 'lal', 'Lalb_Chr08g0246481' => 'lal', 'Lalb_Chr11g0061531' => 'lal', 'Lalb_Chr16g0380001' => 'lal', 'Lalb_Chr19g0124671' => 'lal', 'Lalb_Chr19g0131771' => 'lal', 'Lalb_Chr23g0265701' => 'lal', 'Lj1g0009116' => 'lja', 'Lj1g0014439' => 'lja', 'Lj2C76T27' => 'lonja', 'Lj2g0028112' => 'lja', 'Lj2P499T18' => 'lonja', 'Lj3C954T14' => 'lonja', 'Lj4C236T3' => 'lonja', 'Lj4g0004315' => 'lja', 'Lj5g0017221' => 'lja', 'Lsat_1_v5_gn_0_33141' => 'lsa', 'Lsat_1_v5_gn_1_61541' => 'lsa', 'Lsat_1_v5_gn_2_37700' => 'lsa', 'Lsat_1_v5_gn_2_43501' => 'lsa', 'Lsat_1_v5_gn_3_33921' => 'lsa', 'Lsat_1_v5_gn_3_68040' => 'lsa', 'Lsat_1_v5_gn_4_135300' => 'lsa', 'Lsat_1_v5_gn_5_158740' => 'lsa', 'Lsat_1_v5_gn_7_30561' => 'lsa', 'Lsat_1_v5_gn_8_100320' => 'lsa', 'Lsat_1_v5_gn_8_26980' => 'lsa', 'Lsat_1_v5_gn_9_34101' => 'lsa', 'Lsat_1_v5_gn_9_45381' => 'lsa', 'Lsat_1_v5_gn_9_46521' => 'lsa', 'Manes.01G155300' => 'mes', 'Manes.04G161800' => 'mes', 'Manes.05G124100' => 'mes', 'Manes.07G128600' => 'mes', 'Manes.08G091800' => 'mes', 'Manes.11G000650' => 'mes', 'Manes.12G074900' => 'mes', 'Manes.15G119950' => 'mes', 'Manes.17G068300' => 'mes', 'Manes.18G003900' => 'mes', 'Mapoly0013s0048' => 'mpo', 'MBI02_g29704_MAGBIO' => 'mbi', 'MBI03_g13448_MAGBIO' => 'mbi', 'MBI05_g09436_MAGBIO' => 'mbi', 'MBI05_g14343_MAGBIO' => 'mbi', 'MBI07_g09578_MAGBIO' => 'mbi', 'MBI07_g15282_MAGBIO' => 'mbi', 'MBI08_g12260_MAGBIO' => 'mbi', 'MBI11_g00101_MAGBIO' => 'mbi', 'MBI11_g16098_MAGBIO' => 'mbi', 'MBI14_g31687_MAGBIO' => 'mbi', 'MD00G1127400' => 'mdo', 'MD01G1132900' => 'mdo', 'MD02G1116500' => 'mdo', 'MD02G1116600' => 'mdo', 'MD05G1286800' => 'mdo', 'MD07G1220600' => 'mdo', 'MD10G1264300' => 'mdo', 'MD13G1001900' => 'mdo', 'MD15G1231500' => 'mdo', 'Medtr1g115220' => 'mtr', 'Medtr3g115580' => 'mtr', 'Medtr4g094622' => 'mtr', 'Medtr5g024180' => 'mtr', 'Medtr7g068280' => 'mtr', 'Medtr7g082820' => 'mtr', 'Medtr8g018100' => 'mtr', 'Medtr8g073345' => 'mtr', 'MELO3C003298.2' => 'cme', 'MELO3C007145.2' => 'cme', 'MELO3C013723.2' => 'cme', 'MELO3C017031.2' => 'cme', 'MELO3C019265.2' => 'cme', 'MELO3C027239.2' => 'cme', 'MELO3C033935.2' => 'cme', 'Migut.E00666' => 'egut', 'Migut.J00179' => 'egut', 'Migut.L00772' => 'egut', 'Migut.M00925' => 'egut', 'Migut.N02968' => 'egut', 'Migut.O00318' => 'egut', 'Migut.O00319' => 'egut', 'MSTRG.13668' => 'ama', 'MSTRG.15599' => 'ama', 'MSTRG.19015' => 'ama', 'MSTRG.2077' => 'ama', 'MSTRG.22094' => 'ama', 'MSTRG.24502' => 'ama', 'MSTRG.3629' => 'ama', 'MSTRG.5580' => 'ama', 'MSTRG.7474' => 'ama', 'MSTRG.984' => 'ama', 'Nitab4.5_0000165g0170' => 'nta', 'Nitab4.5_0000495g0130' => 'nta', 'Nitab4.5_0000673g0160' => 'nta', 'Nitab4.5_0000702g0140' => 'nta', 'Nitab4.5_0000806g0060' => 'nta', 'Nitab4.5_0002046g0170' => 'nta', 'Nitab4.5_0002137g0060' => 'nta', 'Nitab4.5_0002707g0040' => 'nta', 'Nitab4.5_0003572g0040' => 'nta', 'Nitab4.5_0005297g0030' => 'nta', 'Nitab4.5_0005543g0020' => 'nta', 'Nitab4.5_0006839g0010' => 'nta', 'Nitab4.5_0007445g0040' => 'nta', 'Nitab4.5_0008997g0020' => 'nta', 'Nitab4.5_0011597g0010' => 'nta', 'Nitab4.5_0020716g0010' => 'nta', 'Nn1g03572' => 'nnu', 'Nn1g07114' => 'nnu', 'Nn2g11467' => 'nnu', 'Nn2g12200' => 'nnu', 'Nn2g13692' => 'nnu', 'Nn3g18557' => 'nnu', 'Nn3g20685' => 'nnu', 'Nn4g25175' => 'nnu', 'Nn4g26544' => 'nnu', 'Nn5g30987' => 'nnu', 'Nn6g31707' => 'nnu', 'Nn7g36833' => 'nnu', 'Oeu012544.1' => 'oeu', 'Oeu029236.1' => 'oeu', 'Oeu033594.1' => 'oeu', 'Oeu035648.1' => 'oeu', 'Oeu036108.1' => 'oeu', 'Oeu039713.1' => 'oeu', 'Oeu039714.1' => 'oeu', 'Oeu041927.1' => 'oeu', 'Oeu042440.2' => 'oeu', 'Oeu042480.1' => 'oeu', 'Oeu063406.1' => 'oeu', 'Os01g0666200' => 'osa', 'Os02g0670400' => 'osa', 'Os04g0564600' => 'osa', 'Os06g0728000' => 'osa', 'Os08g0101100' => 'osa', 'Os09g0551600' => 'osa', 'Peaxi162Scf00122g02315' => 'pax', 'Peaxi162Scf00122g02316' => 'pax', 'Peaxi162Scf00141g00216' => 'pax', 'Peaxi162Scf00329g00121' => 'pax', 'Peaxi162Scf00580g00028' => 'pax', 'Peaxi162Scf01051g00130' => 'pax', 'Peaxi162Scf01198g00213' => 'pax', 'Peaxi162Scf01376g00015' => 'pax', 'Peaxi162Scf02201g00003' => 'pax', 'PGR004G1812' => 'pgr', 'PGR031G2351' => 'pgr', 'PGR031G2644' => 'pgr', 'PGR042G2182' => 'pgr', 'PGR042G2804' => 'pgr', 'PGR044G1367' => 'pgr', 'PGSC0003DMG400001567' => 'stu', 'PGSC0003DMG400008501' => 'stu', 'PGSC0003DMG400013103' => 'stu', 'PGSC0003DMG400016682' => 'stu', 'PGSC0003DMG400018685' => 'stu', 'PGSC0003DMG400025304' => 'stu', 'Phvul.002G194900' => 'pvu', 'Phvul.003G270000' => 'pvu', 'Phvul.007G012700' => 'pvu', 'Phvul.009G012000' => 'pvu', 'Phvul.010G001800' => 'pvu', 'Potri.002G009000' => 'ptr', 'Potri.004G131400' => 'ptr', 'Potri.005G101400' => 'ptr', 'Potri.005G252600' => 'ptr', 'Potri.007G000900' => 'ptr', 'Potri.008G067400' => 'ptr', 'Potri.010G189900' => 'ptr', 'Potri.014G007300' => 'ptr', 'Pp3c13_20600' => 'ppa', 'Pp3c16_10290' => 'ppa', 'Pp3c16_10320' => 'ppa', 'Pp3c17_7580' => 'ppa', 'Pp3c25_7380' => 'ppa', 'Pp3c25_7410' => 'ppa', 'PRCOL_00000911' => 'pco', 'Prupe.1G350700' => 'ppe', 'Prupe.2G249000' => 'ppe', 'Prupe.4G078100' => 'ppe', 'Prupe.6G276300' => 'ppe', 'Prupe.7G182700' => 'ppe', 'Prupe.7G182800' => 'ppe', 'Psat2g148160' => 'psa', 'Psat3g096560' => 'psa', 'Psat3g129760' => 'psa', 'Psat4g103840' => 'psa', 'Psat5g009560' => 'psa', 'Psat6g235800' => 'psa', 'PSO206G0034' => 'pso', 'PSO210G5428' => 'pso', 'PSO339G3526' => 'pso', 'PSO339G3557' => 'pso', 'PSO541G0228' => 'pso', 'PSO541G1006' => 'pso', 'PSO541G1611' => 'pso', 'PSO541G2972' => 'pso', 'PSO541G6047' => 'pso', 'PSO675G4760' => 'pso', 'PSO675G5322' => 'pso', 'PSO675G7623' => 'pso', 'PSO761G0390' => 'pso', 'PSO801G0185' => 'pso', 'QL01p000468' => 'qlo', 'QL01p000554' => 'qlo', 'QL02p014787' => 'qlo', 'QL02p065573' => 'qlo', 'QL03p043172' => 'qlo', 'QL03p064964' => 'qlo', 'QL04p066059' => 'qlo', 'QL04p089257' => 'qlo', 'QL05p042510' => 'qlo', 'QL05p059002' => 'qlo', 'QL06p052945' => 'qlo', 'QL07p005881' => 'qlo', 'QL08p027154' => 'qlo', 'QL10p054392' => 'qlo', 'QL12p031840' => 'qlo', 'QL93p0200_0002' => 'qlo', 'QL93p0249_0027' => 'qlo', 'QL93p1880_0011' => 'qlo', 'RcHm_v2.0_Chr1g0370021' => 'rch', 'RcHm_v2.0_Chr2g0097191' => 'rch', 'RcHm_v2.0_Chr2g0100971' => 'rch', 'RcHm_v2.0_Chr3g0463231' => 'rch', 'RcHm_v2.0_Chr4g0447101' => 'rch', 'RcHm_v2.0_Chr5g0013561' => 'rch', 'RcHm_v2.0_Chr7g0215651' => 'rch', 'Rhsim05G0214100' => 'rsi', 'Rhsim06G0161300' => 'rsi', 'Rhsim10G0196000' => 'rsi', 'Rhsim10G0196200' => 'rsi', 'Rhsim12G0199500' => 'rsi', 'Rhsim13G0194000' => 'rsi', 'RhsimUnG0093500' => 'rsi', 'RhsimUnG0102400' => 'rsi', 'Sabra03G0156200' => 'sbr', 'Sabra04G0086500' => 'sbr', 'Sabra05G0083800' => 'sbr', 'Sabra05G0196000' => 'sbr', 'Sabra07G0000800' => 'sbr', 'Sabra08G0049500' => 'sbr', 'Sabra16G0317900' => 'sbr', 'Sabra19G0060100' => 'sbr', 'Sabra19G0106200' => 'sbr', 'Sabra19G0106400' => 'sbr', 'SalBow2G1580' => 'sbo', 'SalBow3G2687' => 'sbo', 'SalBow5G0590' => 'sbo', 'SalBow5G5592' => 'sbo', 'SalBow6G4983' => 'sbo', 'SalBow7G4546' => 'sbo', 'Sc05g0006400' => 'sci', 'Sc05g0007720' => 'sci', 'Sc15g0004250' => 'sci', 'Sc22g0002460' => 'sci', 'Sc25g0001400' => 'sci', 'Sc26g0004670' => 'sci', 'Sed0006666' => 'sed', 'Sed0008058' => 'sed', 'Sed0009333' => 'sed', 'Sed0011497' => 'sed', 'Sed0014654' => 'sed', 'Sed0014872' => 'sed', 'Sed0017094' => 'sed', 'Sed0024929' => 'sed', 'SEGI_10921' => 'sgi', 'SEGI_21208' => 'sgi', 'SEGI_22127' => 'sgi', 'SEGI_37508' => 'sgi', 'SGA_v2.0_scaffold127G33972' => 'sas', 'SGA_v2.0_scaffold235G43686' => 'sas', 'SGA_v2.0_scaffold364G49985' => 'sas', 'SGA_v2.0_scaffold54G19652' => 'sas', 'SGA_v2.0_scaffold54G19654' => 'sas', 'SGA_v2.0_scaffold75G25017' => 'sas', 'SGA_v2.0_scaffold85G26745' => 'sas', 'SHI20011' => 'shi', 'SHI53210' => 'shi', 'SMO172G0061' => 'smo', 'SMO201G0112' => 'smo', 'SMO367G1234' => 'smo', 'Solyc02g082700.3' => 'sly', 'Solyc03g032130.4' => 'sly', 'Solyc04g008820.3' => 'sly', 'Solyc09g014620.3' => 'sly', 'Sopen02g009310' => 'spe', 'Sopen02g027450' => 'spe', 'Sopen03g005980' => 'spe', 'Sopen04g004000' => 'spe', 'Sopen09g007460' => 'spe', 'Sp1g18410' => 'spa', 'Sp1g18420' => 'spa', 'Sp2g23750' => 'spa', 'Sp3g30920' => 'spa', 'Sp4g16720' => 'spa', 'Sp5g10390' => 'spa', 'Sp7g33350' => 'spa', 'TAR369G0911' => 'tar', 'TAR376G0234' => 'tar', 'TAR381G0891' => 'tar', 'TAR622G0466' => 'tar', 'TAR623G0383' => 'tar', 'TAR627G0220' => 'tar', 'TAR628G0839' => 'tar', 'TAR629G1718' => 'tar', 'TAR629G3183' => 'tar', 'TAR633G2673' => 'tar', 'TAR636G2383' => 'tar', 'THA.LOC104804293' => 'tha', 'THA.LOC104805851' => 'tha', 'THA.LOC104807428' => 'tha', 'THA.LOC104809835' => 'tha', 'THA.LOC104811475' => 'tha', 'THA.LOC104813748' => 'tha', 'THA.LOC104814287' => 'tha', 'THA.LOC104818386' => 'tha', 'THA.LOC104819721' => 'tha', 'THA.LOC104821354' => 'tha', 'THA.LOC104826432' => 'tha', 'Thecc.01G005700' => 'tca', 'Thecc.02G153200' => 'tca', 'Thecc.05G017100' => 'tca', 'Thecc.06G153100' => 'tca', 'Thecc.08G061500' => 'tca', 'Thecc.10G020300' => 'tca', 'Thhalv10004817m.g' => 'esa', 'Thhalv10009371m.g' => 'esa', 'Thhalv10009970m.g' => 'esa', 'Thhalv10010751m.g' => 'esa', 'Thhalv10017360m.g' => 'esa', 'Thhalv10022905m.g' => 'esa', 'Thhalv10026524m.g' => 'esa', 'TPR.G13722' => 'tpr', 'TPR.G13729' => 'tpr', 'TPR.G20474' => 'tpr', 'TPR.G33876' => 'tpr', 'TPR.G38242' => 'tpr', 'TPR.G4017' => 'tpr', 'TPR.G4879' => 'tpr', 'TPR.G8143' => 'tpr', 'TWI09G0481' => 'twi', 'TWI09G1261' => 'twi', 'TWI36G1682' => 'twi', 'TWI53G1408' => 'twi', 'TWI53G1801' => 'twi', 'TWI56G0601' => 'twi', 'TWI73G0278' => 'twi', 'TWI74G1375' => 'twi', 'TWI77G0823' => 'twi', 'unitig_747.g21538' => 'ugi', 'unitig_749.g14170' => 'ugi', 'vmacro13907' => 'vma', 'vmacro15812' => 'vma', 'vmacro16007' => 'vma', 'vmacro18465' => 'vma', 'vmacro20257' => 'vma', 'vmacro21798' => 'vma', 'vmacro23501' => 'vma', 'VMungo0251G1386' => 'vmu', 'VMungo0251G2684' => 'vmu', 'VMungo0331G1659' => 'vmu', 'VMungo0720G2558' => 'vmu', 'VMungo1309G0854' => 'vmu', 'Zm00001eb073900' => 'zma', 'Zm00001eb104320' => 'zma', 'Zm00001eb104350' => 'zma', 'Zm00001eb157450' => 'zma', 'Zm00001eb187040' => 'zma', 'Zm00001eb198700' => 'zma', 'Zm00001eb228620' => 'zma', 'Zm00001eb250190' => 'zma', 'Zm00001eb271910' => 'zma', 'Zm00001eb320870' => 'zma' ) $gf_id = 'HOM05D000727' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000727' ) $data_identifier = 'HOM05D000727' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 1, 'aly' => (int) 11, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 18, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb320870' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1